← All datasets

GSE27394

GSE GEO Potentially related
View on GEO Export SRA CSV

Disrupted processing of long pre-mRNAs and widespread RNA missplicing are components of neuronal vulnerability from loss of nuclear TDP-43

Organism: Mus musculus
Platform: GPL9250
Samples: 29
Experiment Types:
Genome binding/occupancy profiling by array Genome binding/occupancy profiling by high throughput sequencing
Submitted: Feb 17 2011
Last Updated: May 15 2019
Status: Public on Mar 03 2011
Contact: Gene,,Yeo (UCSD)

Relations

SuperSeries of: GSE27201 SuperSeries of: GSE27218 SuperSeries of: GSE27371 BioProject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA137005

Summary

This SuperSeries is composed of the SubSeries listed below.

Overall Design

Refer to individual Series

Analysis (1 step)

View Data Processing
Processing steps for GSE27394
  1. Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to mm8 whole genome using bowtie v0.12.2 with parameters -q -p 4 -e 100 -y -a -m 10 --best --strata

Supplementary Files (1)

GSE27394_RAW.tar Download
GEO Samples (29)
GSM672062 GSM672063 GSM672528 GSM672529 GSM672530 GSM672531 GSM672532 GSM672533 GSM672534 GSM672535 GSM672536 GSM672537 GSM672538 GSM672539 GSM672540 GSM672541 GSM672542 GSM672543 GSM672544 GSM672545 GSM672546 GSM672547 GSM672548 GSM676974 GSM676975 GSM676976 GSM676977 GSM676978 GSM676979

Dataset Citations (1)

PubMed citation (PMID 21358643)

Potentially Related Publications (1)

This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.

Aberrant NOVA1 function disrupts alternative splicing in early stages of amyotrophic lateral sclerosis.
Acta neuropathologica · 2022