ENCSR081XRA
ENCSR ENCODE Potentially relatedshRNA knockdown against SF3B4 in K562 cells followed by RNA-seq. (SF3B4-LV08)
Organism:
Homo sapiens
Experiment Types:
shRNA RNA-seq
Status:
released
Contact:
Brenton Graveley, UConn
Summary
shRNA RNA-seq of SF3B4 in Homo sapiens K562 expressing RNAi targeting H. sapiens SF3B4
Analysis
View Data Processing
Analysis page is available for ENCSR081XRA.
ENCODE Metadata
Total file size: 5.5 GBAssay: shRNA RNA-seq
Target: SF3B4
Biosample: Homo sapiens K562 expressing RNAi targeting H. sapiens SF3B4
Files: 10
Unique ENC file IDs: 10
File Formats
tsv (6)
bigWig (3)
bam (1)
Output types (6)
transcript quantifications (4)
gene quantifications (2)
minus strand signal of unique reads (1)
plus strand signal of all reads (1)
plus strand signal of unique reads (1)
transcriptome alignments (1)
Potentially Related Publications (1)
This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.
Data Files (10)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF454LPD | ENCFF454LPD.bam | bam (transcriptome alignments) | transcriptome alignments | 5.1 GB | link | ||
| ENCFF185DEZ | ENCFF185DEZ.bigWig | bigWig (minus strand signal of unique reads) | minus strand signal of unique reads | 92.4 MB | link | ||
| ENCFF757PII | ENCFF757PII.bigWig | bigWig (plus strand signal of all reads) | plus strand signal of all reads | 93.6 MB | link | ||
| ENCFF551LCS | ENCFF551LCS.bigWig | bigWig (plus strand signal of unique reads) | plus strand signal of unique reads | 84.9 MB | link | ||
| ENCFF010QBP | ENCFF010QBP.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF220XVG | ENCFF220XVG.tsv | tsv (gene quantifications) | gene quantifications | 10.4 MB | link | ||
| ENCFF278WOR | ENCFF278WOR.tsv | tsv (transcript quantifications) | transcript quantifications | 27.3 MB | link | ||
| ENCFF563LEM | ENCFF563LEM.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF727DFK | ENCFF727DFK.tsv | tsv (transcript quantifications) | transcript quantifications | 29.8 MB | link | ||
| ENCFF805CXZ | ENCFF805CXZ.tsv | tsv (transcript quantifications) | transcript quantifications | 27.4 MB | link |