ENCSR137HKS
ENCSR ENCODE Potentially relatedshRNA knockdown against PRPF8 in K562 cells followed by RNA-seq. (PRPF8_BGKLV19)
Organism:
Homo sapiens
Experiment Types:
shRNA RNA-seq
Status:
archived
Contact:
Brenton Graveley, UConn
Summary
shRNA RNA-seq of PRPF8 in Homo sapiens K562 expressing RNAi targeting H. sapiens PRPF8
Analysis
View Data Processing
Analysis page is available for ENCSR137HKS.
ENCODE Metadata
Total file size: 13.3 GBAssay: shRNA RNA-seq
Target: PRPF8
Biosample: Homo sapiens K562 expressing RNAi targeting H. sapiens PRPF8
Files: 10
Unique ENC file IDs: 10
File Formats
bigWig (5)
fastq (3)
bam (2)
Output types (5)
reads (3)
alignments (2)
minus strand signal of all reads (2)
plus strand signal of all reads (2)
minus strand signal of unique reads (1)
Potentially Related Publications (1)
This accession was text-mined from the PMC full text of these publications. It may be referenced for comparison or reused from another study rather than generated for them.
Data Files (10)
| Accession | File Name | Stored Type | Output Type | Mapping Assembly | Size | Download | |
|---|---|---|---|---|---|---|---|
| ENCFF011LIU | ENCFF011LIU.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 3.2 GB | link | |
| ENCFF425MYO | ENCFF425MYO.bam | bam (alignments); assembly: hg19; genome annotation: V19 | alignments | hg19 | 3.4 GB | link | |
| ENCFF050PJL | ENCFF050PJL.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 66.8 MB | link | |
| ENCFF503AME | ENCFF503AME.bigWig | bigWig (minus strand signal of all reads); assembly: hg19; genome annotation: V19 | minus strand signal of all reads | hg19 | 73.0 MB | link | |
| ENCFF819JSU | ENCFF819JSU.bigWig | bigWig (minus strand signal of unique reads); assembly: hg19; genome annotation: V19 | minus strand signal of unique reads | hg19 | 62.6 MB | link | |
| ENCFF129YGD | ENCFF129YGD.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 71.0 MB | link | |
| ENCFF245IRZ | ENCFF245IRZ.bigWig | bigWig (plus strand signal of all reads); assembly: hg19; genome annotation: V19 | plus strand signal of all reads | hg19 | 80.1 MB | link | |
| ENCFF237PYU | ENCFF237PYU.fastq | fastq (reads) | reads | 2.0 GB | link | ||
| ENCFF664ZQE | ENCFF664ZQE.fastq | fastq (reads) | reads | 2.2 GB | link | ||
| ENCFF687GVB | ENCFF687GVB.fastq | fastq (reads) | reads | 2.1 GB | link |